PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.198000.1
Common NameCsa_1G011540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 209aa    MW: 23452.9 Da    PI: 10.3906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.198000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.3e-142571455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +hn+ ErrRRdriN+++  L++l+P+       K + a+ L  +++Y+k+Lq
  Cucsa.198000.1 25 NHNQYERRRRDRINQRMKDLQKLVPNG-----SKTDRASLLDDTIQYLKQLQ 71
                    7*************************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5832170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-192499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-172586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-122571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-162776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-73675No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
EKEYNMKGKT DGSCSNRRTR TAAINHNQYE RRRRDRINQR MKDLQKLVPN GSKTDRASLL  60
DDTIQYLKQL QAQVQFMDSI RSAVPQMVMP LGIQQQQLQM SLLAARMGLL GAASMASSSS  120
SFPCAATFPQ IQLPSIVSTT KPKSKLSTRA FVPPTDPFCT FLAQSMDMDF YSKMVTLYCQ  180
EVNRTPQQTS KLMQSQRIGG GKEDMHQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-131LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-131LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138310.21e-153PREDICTED: transcription factor UNE10
TrEMBLA0A0A0LSD51e-152A0A0A0LSD5_CUCSA; Uncharacterized protein
STRINGVIT_17s0000g06930.t017e-39(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2479622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-26bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]